Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs66927855 chr19:9811728 C/T 4.32E-6 502 31.42 33.62 32.9 KM Plot
THCA rs6696524 chr1:41539494 A/G 1.19E-7 503 27.33 30.48 31.9 KM Plot
THCA rs6698511 chr1:41545150 A/G 1.2E-7 502 27.33 30.43 31.93 KM Plot
THCA rs6713866 chr2:234336143 C/T 9.26E-7 503 31.72 31 26.45 KM Plot
THCA rs6725033 chr2:29055386 C/G 0.000137 503 31.68 30.93 38.87 KM Plot
THCA rs67317751 chr2:238438682 G/A 3.7E-8 497 31.53 31.47 34.1 KM Plot
THCA rs6737065 chr2:29058364 G/A 0.000137 503 38.87 30.93 31.68 KM Plot
THCA rs67376101 chr7:64255206 C/A 9.41E-5 502 31.47 32.9 31.27 KM Plot
THCA rs67482783 chr2:238425352 C/T 7.73E-5 486 31.35 31.38 39.2 KM Plot
THCA rs67535255 chr2:86996848 A/G 4.89E-9 500 32.35 28 14.73 KM Plot
THCA rs67546030 chr2:86928622 TAGATAG/T 6.18E-12 481 32.27 25.08 30.77 KM Plot
THCA rs6755452 chr2:87035076 T/G 6.79E-6 497 32.15 29.62 32.1 KM Plot
THCA rs6768041 chr3:97020067 T/C 5.11E-6 503 31.47 31.77 41.97 KM Plot
THCA rs67760110 chr20:47357883 TA/T 0 499 31.47 33.63 5.8 KM Plot
THCA rs67844335 chr19:9898039 G/A 4.86E-6 497 31.47 33.22 32.9 KM Plot